Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs3129642 chr13:22515200 A/G 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs3129643 chr13:22515457 C/T 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs3129644 chr13:22515660 A/G 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs3129645 chr13:22515703 G/A 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs3129646 chr13:22515782 A/G 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs3129647 chr13:22516742 A/G 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129648 chr13:22516824 T/G 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129650 chr13:22517209 T/A 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129651 chr13:22517211 A/G 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129652 chr13:22518097 C/T 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129653 chr13:22519100 C/T 0.000197 118 41.77 32.7 27.1 KM Plot
THYM rs3129654 chr13:22520535 C/T 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs3129656 chr13:22521565 A/C 0.000249 119 41.77 35.42 27.1 KM Plot
THYM rs3132053 chr2:115016884 G/A 1.2E-8 118 46.07 36.73 7.15 KM Plot
THYM rs3132054 chr2:115016959 G/A 1.2E-8 118 46.07 36.73 7.15 KM Plot